FROGmentator

The goal of FROGmentator is to calculate fragment lengths upon template DNA fragmentation with specific pattern recognizing, (restriction) enzymes

Installation

You can install the development version of FROGmentator from GitHub with:

# install.packages("devtools")
devtools::install_github("pauliusbaltrusis/FROGmentator")

Example

This is a basic example which shows you what FROGmentator does:

library(FROGmentator)
#
my_DNA<-gen_DNA(10000)
pattern1<-'GATC'
FROG_pal_output<-FROG_pal(my_DNA, pattern1)

head(FROG_pal_output) # fragment length sizes
#> [1] 107   9 188  89 351 386

FROG_plot(FROG_pal_output, pattern1)